[关键词]
[摘要]
目的 冠心病(coronary heart disease ,CHD)是目前全球主要的致死性疾病之一,对生物标志物的检测 是目前评估冠心病进展的重要无创方法,对冠心病的诊断和二级预防有着重要意义。本研究旨在筛选冠心病心 肌梗死发病进程中的诊断性生物标志物,分析该病发展过程中的铜死亡相关基因,进一步预测能调控铜死亡相 关基因的中药。方法 检索GEO 数据库获得冠心病心肌梗死芯片数据,分析差异表达基因(Differentially expressed genes,DEGs),对差异基因进行富集分析,基于最小绝对收缩和选择算子(least absolute shrinkage and selection operator,LASSO)与随机森林(Random Forest,RF)方法筛选关键基因,构建诊断性模型并进行验 证。对差异基因进行免疫细胞浸润分析,结果进一步结合加权基因共表达网络分析获得差异表达的免疫相关基 因,与铜死亡基因取交集获得铜死亡免疫相关的核心(Hub)基因,分析铜死亡相关基因与诊断性基因的相关 性。对铜死亡相关基因进行基因集富集分析(Gene Set Enrichment Analysis,GSEA),进一步预测调控铜死亡相 关基因的中药。结果 差异分析获得115 个DEGs,DEGs 主要富集于淋巴细胞介导的免疫,线粒体呼吸链复 合体Ⅳ等生物学过程和C 型凝集素受体信号通路,趋化因子信号通路。机器学习方法筛选出SNORA20、 SNORA19、H4C3、SNORD81、COX7B 五个诊断性基因。免疫浸润分析发现树突状细胞,巨噬细胞M2,单核 细胞,中性粒细胞,自然杀伤细胞,CD4+ T 细胞,CD8+ T 细胞,γδT 细胞,这也表明以上8 种免疫细胞对冠 心病心肌梗死的发病发挥着一定作用。加权基因共表达网络分析(Weighted correlation network analysis, WGCNA)结合免疫浸润分析获得358 个关键模块基因,与铜死亡基因取交集获得3 个铜死亡与免疫特征基因。 5 个诊断性基因与Hub 基因的相关性分析结果显示SLC31A1 与SNORA20,LIAS 与SNORA19、SNORD81, MTF1 与H4C3、SNORA20、SNORA19、SNORD81 的表达具有相关性。GSEA 分析结果提示LIAS 与MTF1 对 NF-κB 信号通路、NOD 样受体信号通路、Toll 样受体信号通路有显著的影响,潜在调控中药以活血化瘀、行 气止痛药为主。结论 SNORA20、SNORA19、H4C3、SNORD81、COX7B 对冠心病心肌梗死具有一定的诊断 价值。冠心病心肌梗死发病过程中铜死亡与免疫浸润相关基因的预测对中医药干预此类疾病的机制研究提供了 一定的参考。
[Key word]
[Abstract]
Abstract: Objective Coronary heart disease (CHD) is one of the major lethal diseases in the world at present. The detection of biomarkers is an important non-invasive method to evaluate the progression of CHD, which is of great significance for the diagnosis and secondary prevention of CHD. This study aims to screen diagnostic biomarkers in the pathogenesis of myocardial infarction, analyze cuprotosis-related genes in the development of this disease, and further predict the traditional Chinese medicine of regulating cuprotosis-related genes. Methods The GEO database was searched to obtain chip data of myocardial infarction, differentially expressed genes (DEGs) were analyzed. Then, DEGs enrichment analysis was performed, and key genes were screened based on least absolute shrinkage and selection operator (LASSO) and random forest (RF) methods. Diagnostic model was constructed and verified. After immune cell infiltration analysis was performed on differential genes, the results were further combined with weighted gene co-expression network analysis to obtain differentially expressed immune-related genes, which were intersected with cuproptosis genes to obtain cuproptosis immune-related Hub genes. The correlation between cuproptosis-related genes and diagnostic genes were analyzed. Gene set enrichment analysis (GSEA) was performed on cuproptosis-related genes to further predict the traditional Chinese medicines of regulating the genes related to cuproptosis. Results A total of 115 DEGs,which were mainly enriched in the biological processes and pathways related to lymphocyte-mediated immunity, mitochondrial respiratory chain complex Ⅳ , C-type lectin receptor signaling pathway,and chemokine signaling pathway,were obtained by differential analysis. Five diagnostic genes,SNORA20,SNORA19,H4C3,SNORD81,and COX7B,were screened out by machine learning methods. Immune infiltration analysis found dendritic cells,macrophages M2,monocytes,neutrophils,natural killer cells, CD4+ T cells,CD8+ T cells,and γδ T cells. It was indicated the above eight immune cells play a certain role in the pathogenesis of myocardial infarction in coronary heart disease. Weighted correlation network analysis (WGCNA) and immune infiltration analysis were used to obtain 358 key module genes,which were intersected with cuproptosis genes to obtain three cuproptosis and immune signature genes. The correlation analysis results of five diagnostic genes and Hub genes showed that there was a correlation between the expressions of SLC31A1 and SNORA20,LIAS and SNORA19, SNORD81, MTF1 and H4C3, SNORA20, SNORA19, SNORD81. GSEA analysis results indicated that LIAS and MTF1 had a significant effect on the NF-κB signaling pathway,NOD-like receptor signaling pathway and Toll-like receptor signaling pathway. The potential regulatory Chinese medicines are mainly blood-activating and stasis-eliminating, qi-promoting and analgesic drugs. Conclusion SNORA20, SNORA19, H4C3, SNORD81, COX7B have a certain diagnostic value for myocardial infarction in coronary heart disease. The prediction of genes related to cuproptosis and immune infiltration in the pathogenesis of myocardial infarction provides a certain reference for the study of the mechanism of traditional Chinese medicine intervention in myocardial infarction.
[中图分类号]
R285.5
[基金项目]
河南省自然科学基金项目(242300421295);崔应民全国名老中医药专家传承工作室建设项目(国中医药人教函[2022]75号);河南省科技 攻关项目(232102310434);河南省中医药科学研究重大专项课题(2022ZYZD20);河南省中医药科学研究重点课题(2023ZY1031)。